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Vizgen Inc merscope mouse brain data
Merscope Mouse Brain Data, supplied by Vizgen Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/merscope+mouse+brain+data/map+merfish+mouse+receptor/bio_rxiv__64898__2026__04__02__713482-70-17-22
Average 86 stars, based on 1 article reviews
merscope mouse brain data - by Bioz Stars, 2026-10
86/100 stars

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Article Title: CellContrast: Reconstructing spatial relationships in single-cell RNA sequencing data via deep contrastive learning
Article Snippet: • This study used publicly available data and the original data can be obtained at the following links: (1) seqFISH data on mouse organogenesis ( https://crukci.shinyapps.io/SpatialMouseAtlas/ ); (2) Stereo-Seq data on mouse embryo ( https://db.cngb.org/stomics/mosta/download/ , E9.5_E2S1); (3) 10X Visium human breast data ( https://cellxgene.cziscience.com/collections/4195ab4c-20bd-4cd3-8b3d-65601277e731 , S06, S08); (4) MERSCOPE mouse brain data ( https://info.vizgen.com/mouse-brain-data , s1r1); (5) SC data of mouse embryo on E9.5 obtained from the GEO database (GEO: GSE87038); and (6) SC data of mouse embryo on E8.5 ( https://content.cruk.cam.ac.uk/jmlab/atlas_data.tar.gz , s29).

Article Title: DenMark: A Bayesian Hierarchical Model for Identifying Cell-Density Correlated Genes from Spatial Transcriptomics
Article Snippet: To illustrate how DenMark can help validate genes hypothesized to be associated with cell distribution, we analyze MERSCOPE mouse brain data from Vizgen, comprising coronal sections across three mouse brain tissue replicates ( ).

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Article Title: Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry
Article Snippet: .. To evaluate the robustness of the model with different ST references, we conducted two studies: one using the MERSCOPE mouse brain data (sample ID: S1R1) generated by Vizgen as the reference and the other using Mouse2_Coronal dataset (slice ID: co2_slice80) from the MERFISH mouse brain data generated by ref. as the reference. ..

Article Title: Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry
Article Snippet: .. Fig. 8 Application to recover 2D locations for scRNA-seq data in mouse brain with different spatial references. a 2D locations for scRNA-seq cells predicted by CeLEry, Tangram, spaOTsc, and novoSpaRc, using Vizgen’s MERSCOPE mouse brain data as the spatial reference. b 2D locations for scRNA-seq cells predicted by CeLEry, Tangram, spaOTsc, and novoSpaRc, using MERFISH mouse brain data generated by Zhang et al. as the spatial reference. ..



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Vizgen Inc merscope mouse brain data
Merscope Mouse Brain Data, supplied by Vizgen Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/merscope+mouse+brain+data/map+merfish+mouse+receptor/bio_rxiv__64898__2026__04__02__713482-70-17-22
Average 86 stars, based on 1 article reviews
merscope mouse brain data - by Bioz Stars, 2026-10
86/100 stars
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